SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models

This repository contains the documentation, test datasets and scripts used in the following study: "SonicParanoid2: fast, accurate, and comprehensive orthology inference with machine learning and language models"- `sonic-manuscript-master.zip` contains all the scripts to reproduce the study, including those for generating the figures and tables included in the manuscript. - sonicparanoid2.wiki.tar.xz contains a snapshot fo the wiki for SonicParanoid2 as of May 30, 2024