Chloroplast assemblies, nuclear SNP genotyping and k-mer count database of a diversity panel of 390 Saccharum accessions and related genera

Data include: (i) description table (TAB) listing accessions and their associated data (ii) chloroplast genome assemblies (FASTA) of 384 accessions (iii) variant call format (VCF) for 390 accessions genotyped for 18,074,258 bi-allelic single nucleotide polymorphisms (iv) k-mer count database including 27,015,331 repeated k-mers from 390 accessions The chloroplast genome assemblies, variant call format and k-mer count database were obtained from whole genome sequencing data, using the procedures described in the related publication.