Predicting and modeling protein-protein interactions in E. coli envelopome

Structural models and Supplementary data described in the reference: Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria. Mu Gao, Davi Nakajima An, and Jeffrey Skolnick<em>. eLife</em>, 2022. <strong>11</strong>: p. e82885. List of files: af2c_fea_220331.tar -- A tarball of input features of full E coli proteome to AF2Complex version 1.3.0. Feature files are pickled and gzipped, which AF2Complex v1.3 takes as input directly. Results of an application to E coli envelopome on four query proteins from the outer membrane biogenesis pathway. Supplementary Data.xlsx -- Virtual PPI screening results of PpiD, YfgM, SurA, and BamA. screening_top1_models.zip -- Compressed top 1 dimeric models of top hits from the PPI screening. Note that these models are unrelaxed. predicted structural models.zip -- Compressed structural models of supercomplexes formed in the OMP biogenesis pathway described in the reference.