Additional file 1 of PASTRY: achieving balanced power for detecting risk and protective minor alleles in meta-analysis of association studies with overlapping subjects

Additional file 1 Table S1. 468 significant loci from the UK biobank Diabetes Mellitus GWAS results. Table S2. 8 significant loci related to the three autoimmune diseases (CD, RA, T1D) and the result of p-values of PASTRY method, LS method, and splitting approach for cross-disease meta-analysis of CD, RA, and T1D from the WTCCC data. Table S3. Power difference of PASTRY and LS at various MAF, RRs, the number of studies. Fig. S1. False positive rates of LS, PASTRY and splitting. Fig. S2. Quantile-Quantile (QQ) plots for the GWAS meta-analysis of three different models.