"Cosmopolitan gut bacteriophages expand the phenotype of health-related bacteria" - Supplementary Data

Data related to the publication about Mushuviridae family and phage-inclusive taxonomic profiling of human gut metagenomes: 1. MSA_Mushuvirus.alnMultiple Sequence Alignment (MSA) calculated in MAFFT v7.5.0.5 (options: --maxiterate 1000 --localpair) for Mushuvirus mushu and Mushuvirus draco together. This alignment was the input for inferring the tree in IQTREE. 2. Mushuvirus_species_specific_seqs.fastaTwo short sequences from region differentiating Mushuvirus mushu and Mushuvirus draco. These sequences were used as a query in Logan search. 3. Mushuviridae_528_genomes.fna528 genome sequences representing 13 genera from Mushuviridae family. 4. reference_phage_genomes.tar.gzcollection of 102,336 phage genomes and 4,744 bacterial MAGs used to construct sylph database. 5. sylph_100c_db.syldbSylph database constructed with compression parameter (-c 100). 6. sylph_tax_metadata.tar.gz (all_phage_genomes_taxo.tsv and uhgg2_metadata.tsv)metadata used to create taxonomic profiles with sylph 7. sylph_taxonomic_profiles.tar.gzSylph output for all studies used in the publicationsubfolders:- ANI- relative_abundance- sequence_abundance- all_profiles