Datasets for <em>Pachypodium lamerei</em>, <em>Apocynum venetum</em>, <em>Asclepias syriaca</em> and <em>Calotropis procera</em> genomes

Dataset for <i>Pachypodium lamerei</i> genome- Genome (Pachypodium_lamerei_genome*.fasta)- Predicted transcripts (Pachypodium_lamerei_v1.0.transcripts)- Predicted coding sequences (Pachypodium_lamerei_v1.0.cds)- Predicted proteins (Pachypodium_lamerei_v1.0.pep)- Genome annotation file (Pachypodium_lamerei_v1.0.gtf)- Gene functional annotation (Pachypodium_lamerei_Trinotate.xls)Dataset for <i>Apocynum venetum</i> genome- Genome (Apocynum_venetum_GCA_019593545.1.fna)- Predicted transcripts (Apocynum_venetum.transcripts)- Predicted coding sequences (Apocynum_venetum.cds)- Predicted proteins (Apocynum_venetum.pep)- Genome annotation file (Apocynum_venetum_v1.0_UT.gtf)- Gene functional annotation (Apocynum_venetum_Trinotate.xls)Dataset for <i>Asclepias syriaca</i> genome- Genome (Asclepias_syriaca_GCA_027405835.1.fna)- Predicted transcripts (Asclepias_syriaca.transcripts)- Predicted coding sequences (Asclepias_syriaca.cds)- Predicted proteins (Asclepias_syriaca.pep)- Genome annotation file (Asclepias_syriaca_UT.gtf)- Gene functional annotation (Asclepias_syriaca_Trinotate.xls)Dataset for <i>Calotropis procera</i> genome- Genome (Calotropis_procera_GCA_004801955.1.fna)- Predicted transcripts (Calotropis_procera.transcripts)- Predicted coding sequences (Calotropis_procera.cds)- Predicted proteins (Calotropis_procera.pep)- Genome annotation file (Calotropis_procera_UT.gtf)- Gene functional annotation (Calotropis_procera_Trinotate.xls)Database containing functionally characterized proteins involved in shikimate, methyl erythritol phosphate (MEP), iridoid and MIA pathways (MIA_db.pep)棒槌树（Pachypodium lamerei）基因组数据集 - 基因组序列文件：Pachypodium_lamerei_genome*.fasta - 预测转录本：Pachypodium_lamerei_v1.0.transcripts - 预测编码序列：Pachypodium_lamerei_v1.0.cds - 预测蛋白质序列：Pachypodium_lamerei_v1.0.pep - 基因组注释文件：Pachypodium_lamerei_v1.0.gtf - 基因功能注释文件：Pachypodium_lamerei_Trinotate.xls 罗布麻（Apocynum venetum）基因组数据集 - 基因组序列文件：Apocynum_venetum_GCA_019593545.1.fna - 预测转录本：Apocynum_venetum.transcripts - 预测编码序列：Apocynum_venetum.cds - 预测蛋白质序列：Apocynum_venetum.pep - 基因组注释文件：Apocynum_venetum_v1.0_UT.gtf - 基因功能注释文件：Apocynum_venetum_Trinotate.xls 马利筋（Asclepias syriaca）基因组数据集 - 基因组序列文件：Asclepias_syriaca_GCA_027405835.1.fna - 预测转录本：Asclepias_syriaca.transcripts - 预测编码序列：Asclepias_syriaca.cds - 预测蛋白质序列：Asclepias_syriaca.pep - 基因组注释文件：Asclepias_syriaca_UT.gtf - 基因功能注释文件：Asclepias_syriaca_Trinotate.xls 牛角瓜（Calotropis procera）基因组数据集 - 基因组序列文件：Calotropis_procera_GCA_004801955.1.fna - 预测转录本：Calotropis_procera.transcripts - 预测编码序列：Calotropis_procera.cds - 预测蛋白质序列：Calotropis_procera.pep - 基因组注释文件：Calotropis_procera_UT.gtf - 基因功能注释文件：Calotropis_procera_Trinotate.xls 包含经功能表征的、参与莽草酸（shikimate）、甲基赤藓醇磷酸（methyl erythritol phosphate, MEP）、环烯醚萜（iridoid）与单萜吲哚生物碱（MIA）通路的蛋白质的数据库（MIA_db.pep）

搜集汇总

背景与挑战

背景概述

该数据集提供了四个Apocynaceae科植物（Pachypodium lamerei、Apocynum venetum、Asclepias syriaca和Calotropis procera）的基因组资源，包括基因组序列、预测的转录本、编码序列、蛋白质以及详细的基因组注释文件。数据集特别关注单萜吲哚生物碱（MIA）途径，并包含相关功能蛋白质数据库，适用于基因组学、进化生物学和代谢工程研究。