smFISH.zip

A zipped file containing all smFISH data used in the paper. Each file represents brain smFISH data using a specific probe set. File names follow the format: [<code>figure_panel]_[probe_set]_raw_data.csv</code>.Each file contains the following columns:<code>cell</code>: cell name;<code>slide</code>: slide ID;<code>zone</code>: claustro-insular ROI;<code>mouse</code>: mouse ID;<code>genotype</code>: mouse genotype;<code>level</code>: brain level (one of four possible entries);<code>level40</code>: bregma +1.42 mm;<code>level44</code>: bregma +1.045 mm;<code>level53</code>: bregma +0.145 mm;<code>level68</code>: bregma -1.355 mm;<code>centroid_x</code>: cell's x-coordinate;<code>centroid_y</code>: cell's y-coordinate;<code>nucleus_area</code>: cell's nucleus area.One file (<code>Fig4c_Fig6a_Fig6b_Nr4a2_raw_data.csv</code>) includes an additional <code>probe_set</code> column, as it contains data from multiple experiments.All other columns correspond to gene probes with count values.MD5 checksum of the zipped file: <code>2b09589a515cccc048d7c8526cd44317</code>