We performed label-free micro-data-independent acquisition (µDIA) to assay brain proteins from a severe model of Alexander disease (AxD, lethal at postnatal day ~35). Of the 5,005 proteins quantified
organism_list.rds - KEGG data for bacterial species in balanced fusion dataset.protein_links_df - dataframe of pairs of proteins that participate in the same KEGG module.orthology_to_protein - maps nc
E. coli pathways are based on the 2nd level KEGG orthology definition with 50 or more protein components only. Positive pairs are with proteins that share at least one KEGG pathway at the 3rd level of
An archived version of the KEGG data directory for use in anvi'o. Can be set up on a computer with an anvi'o installation using the command `anvi-setup-kegg-data --kegg-archive KEGG_build_2025-11-07_6
