Validation datasets, code, and plots for the Archipelago method.

This archive contains validation datasets, output figures, and R scripts used in the paper "Archipelago method for variant set association test statistics" (Lawless et al., medRxiv https://doi.org/10.1101/2025.03.17.25324111). It includes simulated and real GWAS/VSAT summary statistics across 1000 Genomes (1KG), UK Biobank (UKBB), and the Swiss Pediatric Sepsis Study (SPSS). <pre> archipelago_validation/ 1.5G total ├── README.md (2.0K) ├── data/ (1.5G) # contains large files like GWAS summary stats ├── output/ (2.2M) # figures └── src/ (76K) # analysis scripts </pre>