Denomination, GenBank accession number for the Fsp-coding region and H gene, and lineage for each strain are detailed. AS1, Asia 1; AS2, Asia 2; EU1/SA1, Europe 1/South America 1; EU2, Europe 2; EU3,
CHIKV_SM produced after two passages on Vero cells was used to infect mosquitoes and as reference genome.nt, nucleotide; aa, amino-acid; nt; SMAR corresponds to Saint-Martin; GUAD, Guadeloupe; MARTI,
Each zip file contains the reads from one plate of amplicon sequencing for Anopheles coluzzii and An. gambiae. Reads are in 96 FASTQ files, corresponding to 96 specimens per plate.