Probe-level analysis of replication timing, genetic and epigenetic features.

1 E probes were omitted from the table because n<20 for both regions.
2 Probe GC content, gene coverage and TE coverage were calculated and compared to the mean for all probes in that region using one-sample t-tests. Means that were significantly different from the mean for all probes in that region are indicated with P value significance codes as follows: * p<0.05, ** p<0.01, *** p<0.001.
3 Probes positive for the indicated epigenetic modifications were tabulated and compared to the percentage for all probes in that region. Percentages signficantly different than the percentage for all probes in that region are indicated. P values were calculated from the binomial distribution with significance codes as above.