MultiPLIER Fileset

This is the code and data from the MultiPLIER project v0.2.0 (https://github.com/greenelab/multi-plier/tree/v0.2.0). Please see the GitHub repository for more information, including code licensing information. Please see https://github.com/greenelab/rheum-plier-data for more information about individual datasets and citations and cite the original publications as appropriate. If you use any PLIER models, please be sure to cite: Mao W, Harmann B, Sealfon SC, Zaslavsky E, Chikina M. Pathway-Level Information ExtractoR (PLIER) for gene expression data. bioRxiv. 2017. DOI: 10.1101/116061 If you use any recount2 data or models trained on these data, please be sure to cite: Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B and Leek JT (2017). "Reproducible RNA-seq analysis using recount2." Nature Biotechnology. doi: 10.1038/nbt.3838 All recount2 data is CC-BY, recount2 authors.