Supplementary data for Abdel-Glil M et al. (Manuscript 2020)

File Descriptions: Data set 1: Detailed reports on the de novo genome assembly for PacBio sequence data of 23 NCTC <i>Clostridium perfringens</i> strains.<br> Data set 2: (A) Alignment of the deduced AA sequence of the collagenase gene (<i>colA</i>) of 75 <i>Clostridium perfringens</i>. (B) Visualisation of a large deletion of the <i>colA</i> gene in strain CBA7123 (bottom) compared to <i>colA</i> gene in strain 13 (top). (C) FASTA_Alignment of the <i>colA</i> genes of 75 <i>C. perfringens</i> strains.<br> Data set 3: (A) RAST Annotation of the NCTC_8081_plasmid with highlighted <i>cpe</i>, <i>tcp</i> locus and the new toxin homolog. (B) Phylogenetic tree based on the deduced amino acid sequences of representative members of Leukocidin/Hemolysin superfamily and the homolog (locus tag 02938) of the Darmbrand NCTC 8081 strain. <br>Data set 4: (A) Phylogenetic tree based on the deduced amino acid sequences of the <i>pfoA</i> gene and the <i>pfoA</i> like sequence in the strain JP838. Representative members of the cytolysin family were included. (B) Protein alignment of the <i>pfoA</i> gene (top) and the <i>pfoA</i> like sequence (bottom) in strain JP838. (C) FASTA nucleotide alignment of <i>pfoA</i> gene and the <i>pfoA</i> like sequence in strain JP838. <br>Data set 5: The folder includes FASTA sequences and the prokka annotation of the analysed 76 <i>C. perfringens</i> strains, as well as the RAST annotation of the 30 circularized genomes. <br>Data set 6: Sequences of core genes identified using the three different algorithms of GET_HOMOLOGUES. <br>Data set 7: Gene sequences comprising the pangenome of the 76 strains as calculated with Roary.<br>