The CRyPTIC Consortium Dataset

This dataset contains the high-level data tables produced by the CRyPTIC Consortium following the first data freeze in April 2020. It contains information on a large number of M. tuberculosis complex samples that were collected and collated by the project. In total 77,860 samples with whole-genome sequencing (WGS) information (all derived from short-reads) 50,378 samples with at least one phenotypic drug susceptibility test (pDST) result. Of these 17,172 were collected by CRyPTIC and had the minimum inhibitory concentrations of 13 antibiotics measured using either a UKMYC5 or UKMYC6 96-well broth microdilution plate. 41,130 samples have both WGS and pDST data. Of these 15,211 were collected by CRyPTIC For simplicity all data tables are made available as comma separated values (CSV) files. Each has been gzipped to save space.