Defining transcription factor specificity

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转录因子结合位点

基因组学实验

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https://www.ncbi.nlm.nih.gov/sra/SRP514383 数据链接链接失效反馈

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Defining transcription factor specificity through ChIP-seq and protein binding microarrays

创建时间：

2024-07-11

Cdx2 Binding Sites On Cdx2 Expressing ES Cells

转录因子结合位点

表观遗传学

A) Chromatins were prepared from Cdx2-inducible ES cells cultured for 48 - 60 hours in the Dox+ and Dox- conditions. Chromatin immunoprecipitation (ChIP) was carried out by using anti-FLAG M2 affinity

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Additional file 14: Table S11. of Overlapping cell population expression profiling and regulatory inference in C. elegans

基因表达调控

转录因子结合位点

Number of motifs found significant using different numbers of clusters, at different cutoffs. (XLSX 5Â kb)

Figshare2016-12-14 更新70

Genome-wide determinants of Tn5 insertion preference. Genome-wide determinants of Tn5 insertion preference

转座酶偏好性

基因组学实验

We generated Tn5 segmentation data on naked genomic DNA to explore the intrinsic Tn5 insertion preference along the whole genome Overall design: E14 cell line, HSPC primary cell from mouse, and K562 c

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Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding. Dam mutants provide improved sensitivity and spatial resolution for profiling transcription factor binding

转录因子结合位点

DamID技术优化

DamID, in which a protein of interest is fused to Dam methylase, enables mapping of protein-DNA binding through readout of adenine methylation in genomic DNA. DamID offers a compelling alternative to

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TRANSFAC mouse motifs.

转录因子结合位点

基因调控

P-value cut-off 1.

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Defining transcription factor specificity

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