Additional file 3 of A vast resource of allelic expression data spanning human tissues

Additional file 3: Table S2: Sample-threshold and allelic imbalance statistics for haplotype-level AE data. Table where rows are each of the 49 GTEx tissues where eQTLs were called and columns list the number of genes with haplotype-level AE data at minimum number of sample thresholds from 1 to 300 (minXXX). For example, min1 lists the number of genes that have AE data from at least 1 sample. The table has three sheets, the first (all_data) presents statistics generated using all haplotype-level AE data, the second (sig_imb_fdr05), counting only cases with significant allelic imbalance (binomial test versus 50/50, gene-level FDR < 5%), and finally (sig_imb_fdr05_no_het), counting only cases with significant imbalance where the individual is not heterozygous for any top (FDR < 5%) or independent (permutation p < 1e-4) eQTLs across any GTEx tissues for the gene.