Original and modified diploid Valencia sweet orange genomes for transposon element insertion detection

The compressed DVS_reference.zip contains two fasta files: "DVS.fasta" and "DVS.masked.34TE.fasta", which needs to be decompressed and put directly in the REF dir before running the pipeline. DVS.fasta is the published unmodified diploid Valencia sweet orange genome. It contains both DVS_A1.0 (GCA_022201045.1) and DVS_B1.0 (GCA_022201065.1).DVS.masked.34TE.fasta is the modified version of DVS.fasta, whose 34 TE families members have been masked and standalone TE family members have been added.# Sequence ID coversion between DVS.fasta and those in GCA_022201045.1 and GCA_022201065.1 DVS_Sequence_IDChromosome_nameGenBank_accessionRefSeq_accessionSeq_length(bp)SequenceIDDVS1A1CM039161.1NC_068556.1248499871ADVS2A2CM039162.1NC_068557.1329423402ADVS3A3CM039163.1NC_068558.1523086333ADVS4A4CM039164.1NC_068559.1296277434ADVS5A5CM039165.1NC_068560.1389981455ADVS6A6CM039166.1NC_068561.1261767076ADVS7A7CM039167.1NC_068562.1294933667ADVS8A8CM039168.1NC_068563.1305823028ADVS9A9CM039169.1NC_068564.1339982889ADVS1B1CM039170.1-299695611BDVS2B2CM039171.1-327234122BDVS3B3CM039172.1-505418873BDVS4B4CM039173.1-283071594BDVS5B5CM039174.1-370940485BDVS6B6CM039175.1-253329036BDVS7B7CM039176.1-312344857BDVS8B8CM039177.1-323429048BDVS9B9CM039178.1-320564839B