star_Liver2_S2_Aligned.out.sorted.retagged_gene_exon_tagged_clean.bam.dge.txt

Single cell RNA sequencing of liver (2 technical replicates) or spleen (1 technical replicate) mononuclear cells, enriched for innate lymphocytes by depletions of T cells, B cells, and myeloid cells. Cells were subjected to Drop-Seq, and sequenced at the NOrwegian Sequencing Centre (Oslo University Hospital) using a NextSeq500 platform with a 75 bp kit, high output mode, with paired end reads. Drop-seq Core Computational Protocol using STAR alignment were used to map the raw sequencing data to the most recent version of the rat (BN strain) genome (Rnor_6.0). Reads were then grouped by cell barcode and the unique molecular identifiers (UMIs) for each gene counted.