Genomic control inflation factors achieved in real data or in a single replicate of the simulated data sets.

aFBATaff, MQLS and ROADTRIPS are only applicable to binary traits and so do not have results in the ‘Simulated quantitative’ column. bIn the simulated data sets, MQLS and RT could only be based on the 1972 individuals with simulated phenotypes, and so no simulated trait results are displayed in the MQLS3626 and RT3626 rows.