Dataset associated with Antczak et al., Environmental conditions shape the nature of a minimal bacterial genome published in Nature Communications 2019.

<br>Each file contains results obtained from a particular method for all the minimal genome proteins. Some of the results files are created by concatenation of separate protein or group of proteins results files.<br>Filename: 3DLigandSite.txtDescription: Structural models (in pdb format) generated by 3DLigandSite.<br>Filename: Argot2.5.txtDescription: Results (in csv format) containing Gene Ontology terms predicted by Argot2.5.<br>Filename: BLASTAgainstUniProt.txtDescription: Best BLAST for each of the proteins.<br>Filename: CATHFunFams.txtDescription: Results (in json format) containing CATH functional familes predicted by CATH FunFHMMer web server.<br>Filename: CombFunc.txtDescription: Results (in tsv format) containing Gene Ontology terms predicted by CombFunc.<br>Filename: DISOPRED3.txtDescription: Disorder ratio for each residue of all the proteins predicted by DISOPRED3.<br>Filename: eggNOG-Mapper.txtDescription: Results (in tsv format) containing Best Orthologous Groups, KEGG pathways, Gene Ontology terms, gene name, etc. predicted for all the proteins by eggNOG-Mapper.<br>Filename: FFPred3.txtDescription: Results containing Gene Ontology terms predicted by FFPred3.<br>Filename: InterPro.txtDescription: Results (in tsv format) containing families from all InterPro resources. Note interpro runs multiple domain/family based methods together so contains the results fro multiple individual programs<br>Filename: LipoP.txtDescription: Results containing predictions of lipoproteins.<br>Filename: LocTree3.txtDescription: Results (in csv format) containing Gene Ontology terms predicted by LocTree3.<br>Filename: Pfam.txtDescription: Domains predicted for each of the proteins by PfamScan.<br>Filename: Phyre2.zip (compressed txt file)Description: Results containing names of matching structural models and the alignment predicted by Phyre2.<br>Filename: TIGRFAM.txtDescription: Families of equivalogs predicted for each of the proteins by Hmmer3.<br>Filename: TMHMM.txtDescription: Results containing proteins topology predicted by TMHMM.<br>Filename: TrSSP.txtDescription: Results containing predictions of transporters and possible substrates made by TrSSP. <br>