Data and scripts from: Revealing reassortment in influenza A viruses with TreeSort

This repository contains scripts and data to replicate the experiments fromMarkin, A., Macken, C.A., Baker, A.L., and Anderson, T.K., 2024. Revealing reassortment in influenza A viruses with TreeSort. bioRxiv 2024.11.15.623781; doi: https://doi.org/10.1101/2024.11.15.623781For the TreeSort tool and tutorial, see https://github.com/flu-crew/TreeSort.Unzip TreeSort-experiments.zip and see the nested directories and README files for instructions to replicate the study.- See 'simulations' directory for code and instructions to replicate the simulation study.- See 'IAV-reasortment-analysis' directory for data and code to replicate the analysis of reassortment rates and patterns among avian, swine, and human IAV lineages.Contact [e-mail] for questions.