Additional file 2 of STREAM-PRS: a multi-tool pipeline for streamlining polygenic risk score computation
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Additional file 2: Table S1. Timing of running STREAM-PRS for 404 samples in training dataset and 1,000 samples in test dataset. Table S2. Regression results of all parameters for all tools on UK Biobank data for BMI PRS. Table S3: Summary of the correlations between the different scores and the overlap of individuals in the top/bottom 5% scores for BMI PRS. Table S4. Regression results of all parameters for all tools on UK Biobank data. Table S5: Regression results of PRS with lassosum on UK Biobank data. The regression was performed for 10 different control subsets. Table S6: Regression results of PRS with PRSice-2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S7: Regression results of PRS with PRS-CS on UK Biobank data. The regression was performed for 10 different control subsets. Table S8: Regression results of PRS with LDpred2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S9: Regression results of PRS with lassosum2 on UK Biobank data. The regression was performed for 10 different control subsets. Table S10: Summary of amount of cases in top/bottom 5% PRS based on UK Biobank data
提供机构：
Cleynen, Isabelle; Jans, Deborah Sarah; Abakkouy, Yasmina; Becelaere, Sara; Vermeire, Séverine; David, Margaux
创建时间：
2025-10-10
