proactivWorkflow: Identifying active and alternative promoters from RNA-Seq data with proActiv

This data set comprises all files necessary for the running of the proactivWorkflow package. Embryos_Junction_Files.tar.gz: processed junction files (BED) of human preimplantation embryos and human embryonic stem cells<br> (Raw sequencing data: GSE36552, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36552) LUAD_Junction_Files.tar.gz: processed junction files (BED) of Lung Adenocarcinoma normal (n=20) and tumour (n=20) samples (TCGA)<br> (Source: The Cancer Genome Atlas Research Network, https://portal.gdc.cancer.gov/) LUSC_Junction_Files.tar.gz: processed junction files (BED) of Lung Squamous Cell Carcinoma normal (n=20) and tumour (n=20) samples (TCGA)<br> (Source: The Cancer Genome Atlas Research Network, https://portal.gdc.cancer.gov/) Directory Yan_Junction_Files contains processed junction files (BED) of human preimplantation embryos and human embryonic stem cells (Raw sequencing data: GSE36552, https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE36552) gencode.v19.annotation.gtf: GENCODE annotations (Human Release 19) <br> (Source: GENCODE, https://www.gencodegenes.org/human/release_19.html) promoterAnnotation.gencodev19.rds: promoter annotation object corresponding to GENCODE annotation (Human Release 19) resEmbryo.rds: proActiv SummarizedExperiment object of embryo samples resLUAD.rds: proActiv SummarizedExperiment object of LUAD samples resLUSC.rds: proActiv SummarizedExperiment object of LUSC samples resLUNG.rds: proActiv SummarizedExperiment object of LUAD and LUSC samples