遇见数据集

Curated data for phage-bacteria hosts for BioML Hackathon

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Zenodo2024-10-20 更新2026-05-26 收录
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This is the accompanying raw data for this github: https://github.com/havu73/hackathonBio A brief summary of the datasets: For every dataset we have genome sequences for hosts and phages and all positive pairs between phages and hosts (majority of the possible pairs are negative, so we do not save them explicitly). E.coli: 325 bacterial hosts and 96 phages (source study link: https://doi.org/10.1101/2023.11.22.567924) Vibrio: 259 bacterial hosts and 239 phages (source study link: https://doi.org/10.1038/s41467-021-27583-z) Klebsiella: 149 bacterial hosts and 115 phages (source study link: https://doi.org/10.1038/s41467-024-48675-6) phageDB: 74 bacterial hosts and 4766 phages (source link: https://phagesdb.org/) phageScope: 180 bacterial hosts and 4434 phages (source link: https://phagescope.deepomics.org/database)

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2024-10-20
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