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包含博士论文的多基因进化分析用到的菌株、条形码序列GenBank登录号，全基因组获取链接及相关信息。
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2024-03-09
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Additional file 21: of Bacterial whole genome-based phylogeny: construction of a new benchmarking dataset and assessment of some existing methods
Spreadsheet with an overview of all 255 strains from the in vitro evolution experiment. The sequenced strains are marked in bold. (XLSX 29 kb)
NIAID Data Ecosystem110
Lineages of Archaea and Bacteria with the NifD sequences listed in Tables 1 and 2.
*Lineage data were obtained from the NCBI Taxonomy Browser at http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi. Information on the lineage for the each of the organisms examined in this study i
NIAID Data Ecosystem50
16S_rDNA_id_cust.txt used for the PhyloTags program
This is the 16S_rDNA_id_cust.txt file used for the PhyloTags program. This is an identity map showing how related all the bacterial species are in the NCBI refseq database. This file is created from a
NIAID Data Ecosystem50
7 - ITS_HOT_BATS_115_single_cells_tree.nwk
Phyllogenetic tree of the 115 single cells (as well as of 5 HLII strains) based on ITS sequences. as presented in Fig S3.
NIAID Data Ecosystem60
Supporting Dataset S2
Supporting Dataset S2. Files used to infer the 16S rDNA phylogeny aimed at inferring the phylogenetic position of Clade X (shown in Supporting Figure S1). Contains alignment before and after masking,
Figshare2025-03-23 更新50
