Genome-wide haplotype counting in diatoms S. robusta and P. tricornutum - processed datasets
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<strong>Datasets used for genome-wide haplotype counting in <em>S. robusta</em> and <em>P. tricornutum</em> next-generation sequencing data.</strong> For <em>S. robusta</em> and <em>P. tricornutum </em>genome-wide haplotype counting, reliable SNPs set was first identified in ILLUMINA short-read sequencing datasets and then used for counting of the number of haplotypes in the PacBio RS II and MinION long reads. The ILLUMINA and PacBio data of <em>S. robusta</em> were downloaded from https://www.ebi.ac.uk/ena/browser/view/PRJEB36614 and ILLUMINA and Minion data of <em>P. tricornutum</em> were downloaded from https://www.ebi.ac.uk/ena/browser/view/PRJNA487263. Reference genome assembly for<em> S. robusta</em>: CAICTM010000001-CAICTM010004752 (European Nucleotide Archive) and Reference genome assembly for<em> P. tricornutum</em>: GCA_000150955.2 (European Nucleotide Archive). Uploaded files: -.bam files containing S. robusta PacBio self-corrected CCS reads aligned to reference and processed and P. tricornutum self-corrected MinION reads aligned to reference and processed: <em>S_robusta_aligned_corrected_PacBio_reads.bam</em> <em>P_tricornutum_aligned_corrected_MinION_reads.bam</em> -.table files with selected reliable SNPs used for haplotype counting with CHROM, POSITION, REFERENCE and ALTERNATIVE allele <em>S_robusta_SNPs.table</em> <em>P_tricornutum_SNPs.table</em>
