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3x 1 µs all-atom MD trajectories; AMBER ff15ipq & SPC/Eb; T4 Lysozyme; 'Fitting side-chain NMR relaxation data using molecular simulations'

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Zenodo2020-08-19 更新2026-05-25 收录
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Simulation data for "Fitting side-chain NMR relaxation data using molecular simulations" (https://doi.org/10.1101/2020.08.18.256024). 3 x 1 µs all-atom MD simulations of T4 Lysozyme Force field: AMBER ff15ipq with modified methyl rotation barriers<sup>1</sup> Water model: SPC/Eb Compressed protein coordinates saved every 1 ps to enable calculation of side-chain NMR relaxation parameters Contains: 3 x GROMACS .xtc trajectory files for 3 independent simulations 3 x corresponding GROMACS .tpr topology files <sup>1</sup> Hoffmann, F., Mulder, F. A. A., &amp; Schäfer, L. V. (2020). Predicting NMR relaxation of proteins from molecular dynamics simulations with accurate methyl rotation barriers. <em>Journal of Chemical Physics</em>, <em>152</em>(8). https://doi.org/10.1063/1.5135379

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Zenodo
创建时间:
2020-08-19
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