TABLE 3 in Botryosphaeriaceae on palms-a new species of Neodeightonia, N. chamaeropicola, and new records from diseased foliage of ornamental palms in Portugal

TABLE 3. ML and BA analyses statistics results of the phylogenetic trees for each genus.
BotryosphaeriaDiplodiaDothiorellaAnalysis 1Character 2(Figure 1)(Figure 2)(Figure 3)Final likelihood value-2231.851941-1888.282831-3335.303932Number of distinct alignment patterns199121287Percentage of undetermined characters or gaps5.99 %6.34 %13.42 %A0.2037580.2048490.204122Base frequenciesC G0.304203 0.2566240.299778 0.2619470.290760 0.251911MLT AC0.235414 0.9262380.233425 1.9304920.253208 1.733080AG4.1809624.3472214.841324Substitution ratesAT CG1.734633 0.9056502.028162 1.1994142.701129 0.938946CT5.55704612.7304997.289150GT1.0000001.0000001.000000Gamma distribution shape parameter α0.3412270.0713840.193466Tree-length0.3351270.2629840.837246Average SDSF/ PSRF0.009360/ 1.0030.009677/ 1.0020.009693/ 1.002Number of generations205 000185 000385 000BANumber of trees sampled Substitution models used*/ITS30 752 GTR+G+I/6627 752 K80+G/5657 752 HKY+G+I/102Number of unique sitetef1HKY+G/150GTR+G+I /83GTR+G+I/198patternstub2 #---NeodeightoniaNeofusicoccumSardiniellaAnalysis 1Character 2(Figure 4)(Figure 5)(Figure 6)Final likelihood value-2771.280446-5580.514259-1688.208070Number of distinct alignment patterns24142390Percentage of undetermined characters or gaps21.49 %11.66 %3.80 %A0.1988890.1973970.191305Base frequenciesC G0.311917 0.2694840.317145 0.2644480.307965 0.266993MLT AC0.219711 2.7371900.221009 0.8244460.233736 1.536468AG3.3647344.5181543.427787Substitution ratesAT CG1.224139 1.9499811.040991 0.9663991.290770 1.447349CT6.7461978.1603265.654281GT1.0000001.0000001.000000Gamma distribution shape parameter α0.3303640.2578940.223631Tree-length0.5684910.7948460.193846Average SDSF/ PSRF0.009598/ 1.0020.009953/ 1.0010.008896/ 1.006Number of generations290 0001 970 00015 000BANumber of trees sampled Substitution models used*/ITS43 502 GTR+G+I/132295 502 GTR+G+I/1142 252 HKY/31Number of unique sitetef1HKY+I/118HKY+G/185HKY+G/80patternstub2 #-GTR+G+I/132-
1 ML: Maximum Likelihood; BA: Bayesian Analysis. 2 ITS: partial cluster of nrRNA genes, including the nuclear 5.8S rRNA gene and its flanking internal transcribed spacer regions ITS1 and ITS2; PSRF: potential scale reduction factor; SDSF: standard deviation of split frequencies; tef1: partial translation elongation factor