Input features of E. coli proteome for predicting and modeling protein-protein interactions with AF2Complex

Input features to be used with AF2Complex for predicting protein-protein interactions among ~4400 E. coli proteins. A pickled feature file was generated by the feature data pipeline of AF2Complex for each E. coli protein. To reduce storage size, we limited up to 10,000 MSA sequences and up to 10 structural templates from the Protein Data Bank. The cutoff date for sequence libraries and the Protein Data Bank releases used for feature generation is no later than 11-30-2021. ecoli_af2c_fea.txt -- A list of all E coli protein with pre-generated input features af2c_fea_ecoli_220331_msa10ktem10.tar -- Input features named after the UniProt ID of each proteins. Note that after untar the tarball, you may use the gzipped feature pickle files directly with AF2Complex w/o gunzip.