separate_file_by_gene_presence-v2.pl

The aim of this script is to separate a file presenting the codon usage of a set of genomes in two files, one having the data of genomes that present a gene and another the data of genomes that lack a gene.
Program will check in each line of
if it starts with a # symbol or the word genome it will be skipped
each line must have a genome name followed by a tab and a number. It might have items after that if separated by a tab
if a genome is followed by a 0 then it is put in the no haves list
if it has any other number, then it is put in the haves list
Program will check each line in
if it starts with a # symbol it will copy it in the to results files
if it starts with a genome name from the haves list, it will copy it to the haves result file
if it starts with a genome name from the don't haves list, it will copy it to the don't haves result file
Results file will be constructed based on the name and the . You additionally must indicate the results directory at

Usage: perl separate_file_by_gene_presence-v2.pl