MOESM1 of Optimizing microbiome sequencing for small intestinal aspirates: validation of novel techniques through the REIMAGINE study

Additional file 1. Title of data: Culture data, sequenced samples information and OTU table. Description of the data: the culture data section (sheet 1) shows the number of bacterial colonies observed on MacConkey agar (incubated aerobically) and blood agar (incubated anaerobically) for all DA-DTT (N = 101) and DA-U (N = 127) samples. Data are presented as CFU/mL of duodenal aspirate. The sequenced samples information section (sheet 2) provides data for the sequenced DA-DTT (N = 43) and DA-U (N = 112) samples, including the number of bacterial colonies observed on MacConkey agar and blood agar (in CFU/mL of duodenal aspirate), initial DNA concentration, library concentration and library size (number of sequences). The OTU table section (sheet 3) contains the OTU table generated from the sequenced DA-DTT (N = 43) and DA-U (N = 112) samples. The table provides the OTU numbers, taxonomic classification, number of reads for each OTU and the OTU sequence.