Putative small ORF encoded peptides expressed in leg disc.

Here is the list of small ORF that were bioinformatically predicted. Genomic position, name and length (in AA) are shown. Predicted motifs (signal peptide, transmembrane domain, mitochondrial targeting sequence) are also specified. The phyloCSF score is reflecting the conservation of the ORF between the 12 Drosophila species, and is considered to be relevant above 50. The type refers to the position of smORF. The annotated smORF, which have a name, were either functionally studied, or annotated based on the conservation of protein sequence between eucaryotes. Most CG number are smORF that were recently annotated. Pseudogene means the gene is considered as non-functional. Non-coding means that the smORF is localized in non-coding RNA. CDS means the smORF in localized within the coding sequence of a canonical gene, UTR5 upstream and UTR3 downstream of the coding sequence. Other means the smORF is localized in intron or in intergenic region. Differential expression analyses were done between RNAseq data from larval and pupal leg discs. Qval is the p-value of the statistical test, logFC is the log2fold change of expression level between the two conditions, TPM-L, transcripts per million in larval discs, TPM-P, transcripts per million in pupal discs.
(XLSX)