Additional file 2 of pan-Draft: automated reconstruction of species-representative metabolic models from multiple genomes

Additional file 2: Supplementary tables S1-S6. Table S1. Reference genomes of SGB that passed the filtering in the UHGG and OMD databases. Table S2. Details on the genomes in the SGBs that met the criteria from Table S1. Table S3. Known fermentation products of species with data from primary literature or the NJC19 dataset. Table S4. Comparison of the fermentation product predictions of the best MAG-GEMs and pan-GEMs. Table S5. Results from Minimize-Total-Flux and Flux Variability analyses for pan-GEMs, MAG-GEMs, and iso-GEMs. Table S6: Prediction accuracy of models normalized by the total number of predictions.