Selected genes under putative selection in Kholmogor and Yaroslavl cattle breeds.

Note: 1Genes: GSK3B—glycogen synthase kinase 3 beta; Grb10—growth factor receptor-bound protein 10; PLXNC1—plexin C1; TMCC3—transmembrane and coiled-coil domain family 3; FGD6—FYVE, RhoGEF, and pH domain containing 6; MAD2L1—mitotic arrest deficient 2 like 1; WDR19—WD repeat domain 19; KLB—klotho beta; RPL9—ribosomal protein L9; LIAS—lipoic acid synthase; UGDH—UDP-glucose 6-dehydrogenase; UBE2K—ubiquitin-conjugating enzyme E2 K; PDS5A—PDS5 cohesin-associated factor A; PDGFRA—platelet-derived growth factor receptor, alpha polypeptide; KIT—V-kit Hardy–Zuckerman 4 feline sarcoma viral oncogene homolog; TICAM1—toll like receptor adaptor molecule 1; PLIN5—perilipin 5; PLIN4—perilipin 4; SIRT6—sirtuin 6; CREB3L3—cAMP-responsive element-binding protein 3 like 3; NME5—NME/NM23 family member 5; EGR1—early growth response 1; HSPA9—heat shock protein family A (Hsp70) member 9; NT5E—ecto-5′-nucleotidase; LRRC24—leucine-rich repeat-containing protein 24; LRRC14—leucine-rich repeat-containing protein 14; RECQL4—RecQ like helicase 4; MFSD3—major facilitator superfamily domain containing 3; GPT—glutamic-pyruvic transaminase; PPP1R16A—protein phosphatase 1 regulatory subunit 16A; FOXH1—forkhead box H1; CYHR1—cysteine and histidine rich 1; SLC39A4—solute carrier family 39 member 4; CPSF1—cleavage and polyadenylation specific factor 1; ADCK5—aarF domain-containing kinase 5; FBXL6—F-Box and leucine rich repeat protein 6; SCRT1—Scratch family transcriptional repressor 1; DGAT1—diacylglycerol acyltransferase 1; HSF1—Heat shock factor 1; BOP1—BOP1 ribosomal biogenesis factor; HEATR7A—maestro heat like repeat family member 1; GPAA1—glycosylphosphatidylinositol anchor attachment 1; EXOSC4—exosome component 4; OPLAH—5-oxoprolinase, ATP-hydrolysing; GRINA—glutamate ionotropic receptor NMDA type subunit-associated protein 1; PARP10—poly(ADP-ribose) polymerase family member 10; XKR4—XK, Kell blood group complex subunit-related family, member 4; TMEM68—transmembrane protein 8B; TGS1—trimethylguanosine synthase 1; LYN—LYN proto-oncogene, Src family tyrosine kinase; RPS20—ribosomal protein S20; MOS—MOS proto-oncogene, serine/threonine kinase; PLAG1—pleomorphic adenoma gene 1; CHCHD7—coiled-coil-helix-coiled-coil-helix domain containing 7; PIWIL4—piwi like RNA-mediated gene silencing 4; GUCY1A2—guanylate cyclase 1 soluble subunit alpha 2; ACAT1—acetyl-CoA acetyltransferase 1; KDELC2—KDEL (Lys-Asp-Glu-Leu) containing 2; EXPH5—exophilin 5; DDX10—DEAD-box helicase 10; NPPB—natriuretic peptide B; NPPA—natriuretic peptide A; CLCN6—chloride voltage-gated channel 6; MTHFR—methylenetetrahydrofolate reductase; AGTRAP—angiotensin II receptor associated protein; FBXO2—F-box protein 2; TNFRSF1B—tumour necrosis factor receptor superfamily, member 1B; MFN2—mitofusin 2; PLOD1—procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1; mTOR—mammalian target of rapamycin; ANGPTL7—angiopoietin like 7; EXOSC10—exosome component 10; MASP2—mannose-binding lectin-associated serine protease 2; IL2—interleukin 2; ADAD1—adenosine deaminase domain containing 1; UQCRFS1—ubiquinol-cytochrome c reductase, Rieske iron–sulphur polypeptide 1; GALNS—galactosamine(N-acetyl)-6-sulfatesulfatase; CBFA2T3—CBFA2/RUNX1 partner transcriptional co-repressor 3; CDH15—cadherin15, type1, M-cadherin; SPG7—SPG7 matrix AAA peptidase subunit, paraplegin; CPNE7—copine 7; DPEP1—dipeptidase 1; CHMP1A—charged multivesicular body protein 1A; CDK10—cyclin dependent kinase 10; SPATA2L—spermatogenesis associated 2 like; FANCA—Fanconi anaemia, complementation group A; TCF25—transcription factor 25; SPIRE2—spire type actin nucleation factor 2; TUBB3—tubulin beta 3 class III; GAS8—growth arrest specific 8; MC1R—melanocortin 1 receptor; UBE3A—ubiquitin protein ligase E3A; NDUFV2—NADH dehydrogenase flavoprotein 2; breed: YRSL—Yaroslavl, KHLM—Kholmogor; BTA—Bos taurus autosome; positions—start and end positions of a gene (bp) according to Bos_taurus_UMD_3.1.1 genome assembly (https://www.ncbi.nlm.nih.gov/assembly/GCF_000003055.6). (XLSX)