Additional file 13 of Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima

Additional file 13: Table S5. List of the genomic regions associated with four different categories of phenotypic traits. Regions were defined based on 50 kb windows around the significant SNPs detected with any of the three models. Overlapping regions were combined into a single one. Only regions detected with at least two methods were retained. The chromosome (Chr), the starting (Position 1) and ending (Position 2) positions, the size of the region (Intervals) in base pairs, the number of significant SNPs included (Sign_SNPs_nb) and the lowest p-values obtained with the different methods are indicated. Sheets “RYMV” and “Tmax”concerned the regions identified for the resistance to RYMV and the maximum temperature related variables, respectively. The sheet “Flowering” concerned regions identified with the early sowing flowering time (Early) or the late sowing flowering time (Late) traits, as indicated in the columns “Trait 1” and “Trait 2”. The sheet “Panicle” concerned regions identified with rachis length (RL), primary branch average length (PBL), primary branch internode average length (PBintL), secondary branch number (SBN), secondary branch average length (SBL), and secondary branch internode average length (SBintL), as indicated in the columns “Trait 1” and “Trait 2”.