Result files (ALLDATA): "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data with LC-MS²Struct"

Result files associated with the publication: "<strong>Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data</strong>" by Bach et al. The following files are included in the archive: Raw max-marginal predictions using LC-MS²Struct for all LC-MS² experiments of the ALLDATA setup Averaged max-marginals for the LC-MS²Struct over all SSVM models Top-k accuracies for the comparison methods (MS²+RT, ...) Ranks for the ground-truth structures predicted by Only MS² and LC-MS²Struct (molecule class analysis) Instructions: clone the repository containing the experimental scripts and analysis notebooks: https://github.com/aalto-ics-kepaco/lcms2struct_exp download the archive in this repository unpack the archive in the git-repository root directory follow the instructions given in the README.md of the git-repository to reproduce the figures, etc. Version history: <strong>Version 1</strong>: Experimental results for "Method comparison" and "Molecule classification analysis" where performed with <strong>2D fingerprints</strong> (preprint v1) <strong>Version 2</strong> <em>(this version)</em>: Experimental results for "Method comparison" and "Molecule classification analysis" where performed with <strong>3D fingerprints</strong>