遇见数据集

Offline resource for metalinks KG generation

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Zenodo2024-04-29 更新2026-05-26 收录
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The upload contains additional file needed to run the metalinksDB BioCypher adapters (https://github.com/biocypher/metalinks) File descriptions:metmap_curated.csv: ID mapping table with small manual curations obtained from here: Canzler S (2022). metaboliteIDmapping: Mapping of Metabolite IDs from Different Sources. R package version 0.99.10, https://github.com/yigbt/metaboliteIDmapping. 9606.protein_chemical.links.detailed.v5.0.tsv and 9606.actions.v5.0.tsv: Human version 5 datasets from STITCH database (http://stitch.embl.de/) Szklarczyk, D., Santos, A., von Mering, C., Jensen, L. J., Bork, P., & Kuhn, M. (2016). STITCH 5: augmenting protein-chemical interaction networks with tissue and affinity data. Nucleic acids research, 44(D1), D380–D384. https://doi.org/10.1093/nar/gkv1277 neo4jv5_20231116.dump: MetalinksDB neo4j dump that is the basis for the webpage (https://metalinks.omnipathdb.org/)

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Zenodo
创建时间:
2023-11-23
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