pyRAD output: c88_d6m4p2_wRE.readloci

Locus file from pyRAD, clustering at 0.88 similarity, a minimum of 4 individuals per locus. This file can be read in using the read.pyRAD function of the R package RADami (http://cran.r-project.org/web/packages/RADami/index.html); structure of the data is described in the documentation to pyRAD (code.google.com/p/pyrad/; www.dereneaton.com/software). Briefly, each locus is represented by a sequence alignment of those individuals for which the cluster was found, and loci are delimited by a break line that indicates variable sites.