Genomes plasmids MDR B. fragilis ONT sequence read files in fastq format
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Supporting data for the manuscript <em>Complete genome assembly of clinical multidrug resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial resistance genes and plasmids.</em> Oxford Nanopore reads demultiplexed with Deepbinner v0.2.0 and base-called (with demultiplexing) using Albacore v2.3.3. Barcodes and adapters were removed with Porechop v0.2.4 with the --discard_middle option. Data from each isolate was produced from two runs per isolate. Data for the individual runs are included here. They can easily be concatenated eg with cat. Runs are named TVS_01,. TVS_02, TVS_03 and TVS_04. Fast5 (only demultiplexed with deepbinner and basecalled with albacore) as well as illumina reads and genome assemblies can be found via the NCBI bioproject accessions: Isolates, NCBI bioproject accession no: CCUG4856T, PRJNA525024 BFO17, PRJNA244943 BFO18, PRJNA244944 S01, PRJNA244942 BFO42, PRJNA253771 BFO67, PRJNA254401 BFO85, PRJNA254455 <strong>md5sum's (also found in the file md5.md5):</strong> 135d0570a1e49e25c8fde59f321cca68 BFO17_TVS_03_99377.barcode02_trimmed.fastq.gz<br> 3c6ca800a1f735937c0cffccd263fb82 BFO18_TVS_01_97673.barcode03_trimmed.fastq.gz<br> dc37823950f529d3a859b7a7c514af8c BFO18_TVS_03_99377.barcode03_trimmed.fastq.gz<br> abd707404f9ebbc38652e45ed378ca21 BFO42_TVS_02.barcode10_trimmed.fastq.gz<br> 9761e9ab082e276624c5778dcbeaffd2 BFO42_TVS_04.barcode10_trimmed.fastq.gz<br> ffc27009c0f7fead1af84ce045dbe5f3 BFO67_TVS_02.barcode09_trimmed.fastq.gz<br> 06c363a7feeeb88f9d195b3769b37f2b BFO67_TVS_04.barcode09_trimmed.fastq.gz<br> 5553c95cc98f4b9d4cfb38c4f8f8f037 BFO85_TVS_02.barcode08_trimmed.fastq.gz<br> b1a8013cba7a079cee6d3bdd6cd97ff2 BFO85_TVS_04.barcode08_trimmed.fastq.gz<br> 8169225219a5fb20935d5f0304aa80c5 CCUG4856T_TVS_01_97673.barcode01_trimmed.fastq.gz<br> a509b0ae912a798a91e677795198c1c6 CCUG5846T_TVS_03_99377.barcode01_trimmed.fastq.gz<br> 8a9d2eb8b626a6e87ed267d31aa220e3 S01_TVS_01_97673.barcode04_trimmed.fastq.gz<br> 69e239a17becc25a4f103dfc3bf5886a S01_TVS_03_99377.barcode04_trimmed.fastq.gz
