Core alignment of global collection of HSV-1 genomes
收藏DataCite Commons2020-08-27 更新2024-07-27 收录
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https://figshare.com/articles/Core_alignment_of_global_collection_of_HSV-1_genomes/8088605/1
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资源简介：
<i>De novo</i> assembly was performed on the HSV-1 reads using IVA, and contigs were evaluated using the built-in quality tools and with Kraken. to screen for contamination. To analyse our data in a global context, we aligned our <i>de novo</i> assembled contigs along with previously published sequences from around the world to the HSV-1 strain 17 reference genome using parsnp; this restricted the dataset to an alignment of 93,475 common, non-repetitive nucleotide positions including 2,135 parsimony informative sites.
提供机构：
figshare
创建时间：
2019-05-29
