WGS sequencing of S. Typimurium involved in a crusie ship outbreak

NIAID Data Ecosystem2026-05-26 收录

食源性疾病暴发调查

病原体溯源

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP174149 数据链接链接失效反馈

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资源简介：

Raw sequence reads from Illumina NextSeq500 of S. Typimurium that was involoved in a crusie ship outbreak.

创建时间：

2018-12-22

Table_1_Application of prophage sequence analysis to investigate a disease outbreak involving Salmonella Adjame, a rare serovar and implications for the population structure.XLSX

食源性疾病暴发调查

前噬菌体分型分析

IntroductionOutbreak investigation of foodborne salmonellosis is hindered when the food source is contaminated by multiple strains of Salmonella, creating difficulties matching an incriminated organis

NIAID Data Ecosystem70

Listeria monocytogenes wgMLST scheme.

细菌基因组学

病原体溯源

Backup of BioNumerics Listeria monocytogenes wgMLST scheme.

DataCite Commons2025-01-22 更新50

Listeria monocytogenes in a frozen vegetable processing environment

食品微生物安全

病原体溯源

Listeria monocytogenes isolates from a frozen vegetable processing environment were subtyped and in-house clones were identified based on MLST-ST, cgMLST-CT and SNP data. Further, comparative genomic

NIAID Data Ecosystem30

Investigation of a staphylococcal food poisoning outbreak in Luxembourg using epidemiological case-control analysis, traditional typing and whole genome sequencing. Staphyloccocal food poisoning investigation in Luxembourg, 2014

食源性疾病暴发调查

病原体溯源

In June 2014, a staphylococcal food poisoning outbreak occurred at an international equine sports event in Luxembourg requiring the hospitalization of 31 persons. We conducted a microbiological invest

NIAID Data Ecosystem60

Genome-wide identification of host-segregating epidemiological markers for source attribution in Campylobacter jejuni

病原体溯源

食源性疾病归因

Campylobacter is among the most common worldwide causes of bacterial gastroenteritis. This organism is part of the commensal microbiota of numerous host species, including livestock, and these animals

NIAID Data Ecosystem30

WGS sequencing of S. Typimurium involved in a crusie ship outbreak

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