DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene

Mordret, S., Piredda, R., Vaulot, D., Montresor, M., Kooistra, H. C. F. & Sarno, D. (under revision 2018). DinoREF: a curated dinoflagellate (Dinophyceae) reference database for the 18S rRNA gene. Molecular Ecology Resources.Supplementary Material 1 List of 18S sequences included in DinoREF including annotations extracted from GenBank and literature sources (see “read-me” for details on metadata).Supplementary Material 2Fasta file (.fast) of sequences used to build DinoREF including the GenBank Accession number of each sequence.Supplementary Material 3DinoREF taxonomy file 1 (.taxonomy) with the taxonomy provided by GenBank for each sequence included in the database. Supplementary Material 4DinoREF taxonomy file 2 (.taxonomy) with the 8-level taxonomy for each sequence included in the database. Supplementary Material 5DinoREF taxonomy file 3 (.taxonomy) with the classification by Superclades for each sequence included in the database.Supplementary Material 6List of V4 unique sequences. When multiple 18S sequences share the same V4 region, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.Supplementary Material 7List of OTUs_98%. When multiple V4 sequences cluster in the same OTU at 98%, the sequences IDs (GenBank # and species name) are reported, one after the other, in the same row.Supplementary Material 8 Fasta file (.fasta) of sequences of early branching dinoflagellates.