Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants

Supplementary Data 4 from the manuscript "Shifts in evolutionary lability underlie independent gains and losses of root-nodule symbiosis in a single clade of plants". A concatenated alignment of all samples and all loci. This file was used for branch length estimation and not directly for phylogeny reconstruction (though an extraction of each subtree taxonomic samples subset from this alignment would be the alignment used to produce the scaffolded subtrees that were described in the paper). Sequences are labeled by well and can be mapped back to taxon for sub-setting and further use using Supplementary Data 1.