S1 Tables -

This excel file includes 11 supplementary tables whose titles are listed below. Table A. Number of progeny (female, intersex and male) and proportion of neomales per sequenced dam. Table B. Positions on the Swanson reference genome and flanking sequences of the 192 SNPs used in validation. Table C. List of the 192 SNPs detected in 6 validation populations (named A to F) with their positions on Swanson (SW) and Arlee (AR) reference genomes. Table D. List of most significative SNPs found in Omy1, Omy12 and Omy20 QTL. Table E. Mean, Minimum and Maximum values of the 30 haplotypes with the highest Gini index over 100 runs of Random Forests for Omy1 QTL. Table F. Mean, Minimum and Maximum values of the 10 haplotypes with the highest Gini index over 100 runs of Random Forests for Omy12 QTL. Table G. Mean, Minimum and Maximum values of the 30 haplotypes with the highest Gini index over 100 runs of Random Forests for the 3 Omy 20 QTL (Z3, Z4, Z5). Table H. Mean values of the 60 haplotypes with the highest Gini index over 100 runs of Random Forests for the QTL regions of Omy1 (Z1), Omy12 (Z2) and Omy20 (Z3 to Z5). Table I. List of potential candidate genes for QTL on Omy1, Omy12 and Omy20 with their descriptions on GeneCards, UniProtKB/Swiss-Prot and NCBI databases. Table J. Location, annotation, alleles and genotypes for sequenced dams of the 100 most important SNPs in DAPC analysis. Genotypes in blue are considered as male genotypes, genotypes in orange as female genotypes and genotypes in light orange are heterozygous. Table K. Protein sequence identities of genes associated to sex-reversal in rainbow trout across six species in Vertebrates. (XLS)