Code and data - The Occurrence Birth-Death Diffusion Process: Unraveling Diversification Histories with Fossils and Heterogeneous Rates

Overview This project introduces the Occurrence Birth-Death Diffusion (OBDD) model and applies it to study the diversification dynamics of cetaceans. It builds on the Tapestree.jl framework. Directory Structure and Description OBDD_illustration_figure.Rmd: Code for producing Figure 1 of the article Calibration/: Model validation .jl files: Julia scripts .submit files: HTcondor cluster submission files datasets_calibration/: simulated datasets outputs/: MCMC trace files Cetacea/: Diversification analyses .jl files: Julia scripts .submit files: HTcondor cluster submission files outputs/: MCMC trace files