Doctoral thesis-Mengqi Wang-Chapter 5

Table S1 Genes and their primer sequences used for real-time qPCR validation of RNA-sequencing results Table S2 Read mapping statistics of whole-genome bisulfite sequencing data and RNA sequencing data of six cows Table S3 The list of differentially methylated cytosines (DMCs) in the context of CpG, CHG and CHH Table S4 The number of DMCs (CpG, CHG and CHH) in different genetic regions Table S5 The list of DMRs and annotation Table S6 The list of genes harboring DMCs or overlapping with DMRs Table S7 Functional enrichment of genes harboring at least 15 DMCs Table S8 The list of differentially methylated haplotype blocks (dMHBs) and functional enrichment for hyper dMHBs Table S9 The list of differentially expressed (DE) genes and their functional enrichment Table S10 The genome-wide correlation between DNA methylation and gene expression and list of MetGDE genes Table S11 The results of functional enrichment differentially methylated and expressed genes (MetGDE genes) Table S12 The cluster of functional annotations enriched by differential methylated and expressed genes (MetGDE genes) Table S13 The correlation between discriminant candidate biomarkers