five

A draft genome assembly of reef-building octocoral Heliopora coerulea

收藏
Mendeley Data2024-01-31 更新2024-06-29 收录
下载链接:
https://figshare.com/articles/dataset/A_draft_genome_assembly_of_reef-building_octocoral_em_Heliopora_coerulea_em_/22093037/1
下载链接
链接失效反馈
官方服务:
资源简介:
Abstract Coral reefs are under existential threat from climate change and anthropogenic impacts. Genomic studies have enhanced our knowledge of resilience and responses of some coral species to environmental stress, but reference genomes are lacking for many coral species. The blue coral Heliopora is the only reef-building octocoral genus and exhibits optimal growth at a temperature close to the bleaching threshold of scleractinian corals. Local and high-latitude expansions of Heliopora coerulea were reported in the last decade, but little is known about the molecular mechanisms underlying its thermal resistance. We generated a draft genome of H. coerulea with an assembled size of 429.9 Mb, scaffold N50 of 1.42 Mb and BUSCO completeness of 94.9%. The genome contains 239.1 Mb repetitive sequences, 27,108 protein coding genes, 6,225 lncRNAs, and 79 miRNAs. This reference genome provides a valuable resource for in-depth studies on the adaptive mechanisms of corals under climate change and the evolution of skeleton in cnidarian. Data Records The Illumina, PacBio HiFi, and RNAseq data have been deposited in NCBI Sequence Read Archive with accession number SRR23530023, SRR23530024, SRR23530025, SRR23530026, SRR23530027, SRR23530028, SRR23530029, SRR23530030, and SRR23530031, under Bioproject accession number PRJNA936655. The genome assembly has been deposited at GenBank with accession number JASJOG000000000. The genome annotation (“Hco_maker_PASA_Final.gff”) and predicted genes (“Hco_v1.transcript.fasta” and “Hco_v1.protein.fasta”), lncRNA (“Hco_lncRNA.fasta”), and miRNA (“Hco_miRNA_mature.fasta”) has been deposited in the Figshare database. #Genome paper published in Scientific Data in 2023.
创建时间:
2024-01-31
5,000+
优质数据集
54 个
任务类型
进入经典数据集
二维码
社区交流群

面向社区/商业的数据集话题

二维码
科研交流群

面向高校/科研机构的开源数据集话题

数据驱动未来

携手共赢发展

商业合作