SNPs significantly associated with RA, AS, T1D, MS, and ATD (p<0.05).

SNPs that are significantly associated with all five autoimmune diseases (based on p-values previously reported by the WTCCC). While these SNPs are commonly significantly associated with five autoimmune diseases in our dataset, by examining the signs of the odds-ratios we see that for the same SNP, often different alleles are associated with different diseases.