Pangenome-scale annotation of mycobacteriophages for dissecting phage–host interactions based on a Sequence Clustering and Structural Homology analysis strategy

This record contains data related to the article "Pangenome-scale annotation of mycobacteriophages for dissecting phage–host interactions based on a Sequence Clustering and Structural Homology analysis strategy." 1.foldseek_pdb_c80_id50_exhaustive.m8.gz contains raw foldseek search result of mycoPHG_clu_model_db against PDB. 2.foldseek_afdb-swissprot_c80_id50_exhaustive.m8.gz contains raw foldseek search result of mycoPHG_clu_model_db against afdb-swissprot. 3.foldseek_afdb_c80_id50_exhaustive.m8.gz contains raw foldseek search result of mycoPHG_clu_model_db against afdb. 4.pdb_bestmatch.m8 contains best foldseek search result of mycoPHG_clu_model_db against PDB. 5.afdb-swissprot_bestmatch.m8 contains best foldseek search result of mycoPHG_clu_model_db against afdb-swissprot. 6.afdb_bestmatch.m8 contains best foldseek search result of mycoPHG_clu_model_db against afdb. 7.Mycobacteriophage_cluster_rep_structure.tar.gz contains the alphafold-predicted model of representative sequences of mycoPHG_clu_db. 8.mycoPHG_clu_cluster.tsv is a flat tsv-format clustering result file generated by mmseqs2; the first line was the cluster-representative, and the second line was cluster-member. 9.mycobacteriophage_structural_annotation.tsv contains structural annotation result of 240,754 proteins from 2,169 mycobacteriophage genomes. 10.DeepFRI_raw_result.tar.gz contains raw mycoPHG_clu_model_db Gene Ontology and Enzyme Commission number result predict by DeepFRI. 11.MPC_clu_result_cluster.tsv is a flat tsv-format clustering result file generated by foldseek; the first line was the cluster-representative, and the second line was cluster-member. 12.Anti-defence-db.tar.gz contains the alphafold-predicted model of counter-defense protein structure database. 13.Anti-defence-PPI.tar.gz contains the predicted complex between Mycobacteriophage conter-defence-associated protein and mycobacteria defense-associated protein. 14.Replication-transcription-translation-PPI.tar.gz contains the predicted complex between these phage genes and mycobacterial replication-, transcription-, and translation-related proteins.