pQTL-mapping-rev1

Contains code to replicate genetic mapping and figures for pQTN manuscript (submitted; pre-print on bioRxiv): https://www.biorxiv.org/content/10.1101/2024.10.18.619054v1 plotting_master_script.m will generate the figures in the manuscript. Specify your local code_directory, desired output_directory for the figure files, and download the dependencies and specify the dependency_directory to run the script. Also included are functions and example Snakemake file for pQTN mapping on SWATH-MS data.